HL_8UQL_018

3D structure

PDB id

8UQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH in loaded state, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

8UQL|1|D|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UQL_018 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.1318

The information below is about HL_5J7L_012

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8UQL|1|D|G|462
8UQL|1|D|U|463
8UQL|1|D|U|464
8UQL|1|D|A|465
8UQL|1|D|A|466
8UQL|1|D|U|467
8UQL|1|D|A|468
8UQL|1|D|C|469
8UQL|1|D|C|470

Current chains

Chain D

16S rRNA

Nearby chains