3D structure

PDB id
8UQL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH in loaded state, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
AGAGAU
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8UQL_028 not in the Motif Atlas
Homologous match to HL_4LFB_022
Geometric discrepancy: 0.273
The information below is about HL_4LFB_022
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

8UQL|1|D|A|1012
8UQL|1|D|G|1013
8UQL|1|D|A|1014
8UQL|1|D|G|1015
8UQL|1|D|A|1016
8UQL|1|D|U|1017

Current chains

Chain D
16S rRNA

Nearby chains

Chain S
30S ribosomal protein S14
Chain W
30S ribosomal protein S19

Coloring options:


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