HL_8UQL_093

3D structure

PDB id

8UQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH in loaded state, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UQL_093 not in the Motif Atlas

Homologous match to HL_7RQB_055

Geometric discrepancy: 0.153

The information below is about HL_7RQB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.3

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8UQL|1|a|G|2303
8UQL|1|a|G|2304
8UQL|1|a|U|2305
8UQL|1|a|C|2306
8UQL|1|a|G|2307
8UQL|1|a|G|2308
8UQL|1|a|A|2309
8UQL|1|a|C|2310
8UQL|1|a|A|2311
8UQL|1|a|U|2312
8UQL|1|a|C|2313

Current chains

Chain a

23S rRNA

Nearby chains

Chain n

50S ribosomal protein L5