HL_8UQL_104

3D structure

PDB id

8UQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH in loaded state, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8UQL|1|a|G|2751, 8UQL|1|a|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UQL_104 not in the Motif Atlas

Homologous match to HL_4WF9_062

Geometric discrepancy: 0.1146

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8UQL|1|a|C|2745
8UQL|1|a|U|2746
8UQL|1|a|G|2747
8UQL|1|a|A|2748
8UQL|1|a|A|2749
8UQL|1|a|A|2750
8UQL|1|a|G|2751
8UQL|1|a|C|2752
8UQL|1|a|A|2753
8UQL|1|a|U|2754
8UQL|1|a|C|2755
8UQL|1|a|U|2756
8UQL|1|a|A|2757
8UQL|1|a|A|2758
8UQL|1|a|G|2759

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

50S ribosomal protein L6

Chain q

50S ribosomal protein L36

Chain s

50S ribosomal protein L13