HL_8UQP_003

3D structure

PDB id

8UQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUUCAAAUC

Length

9 nucleotides

Bulged bases

8UQP|1|A|C|56, 8UQP|1|A|A|57

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UQP_003 not in the Motif Atlas

Homologous match to HL_4V7M_034

Geometric discrepancy: 0.3738

The information below is about HL_4V7M_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UQP|1|A|G|53
8UQP|1|A|U|54
8UQP|1|A|U|55
8UQP|1|A|C|56
8UQP|1|A|A|57
8UQP|1|A|A|58
8UQP|1|A|A|59
8UQP|1|A|U|60
8UQP|1|A|C|61

Current chains

Chain A

E-site and P-site fMet-tRNA

Nearby chains

Chain a

Large subunit ribosomal RNA; LSU rRNA