HL_8UQP_017

3D structure

PDB id

8UQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8UQP|1|D|U|421

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UQP_017 not in the Motif Atlas

Homologous match to HL_5J7L_011

Geometric discrepancy: 0.1055

The information below is about HL_5J7L_011

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

8UQP|1|D|C|419
8UQP|1|D|U|420
8UQP|1|D|U|421
8UQP|1|D|C|422
8UQP|1|D|G|423
8UQP|1|D|G|424

Current chains

Chain D

16S rRNA

Nearby chains

Chain I

30S ribosomal protein S3

Chain J

30S ribosomal protein S4