HL_8UQP_065

3D structure

PDB id

8UQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UQP_065 not in the Motif Atlas

Homologous match to HL_5J7L_160

Geometric discrepancy: 0.0926

The information below is about HL_5J7L_160

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42998.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8UQP|1|a|G|978
8UQP|1|a|A|979
8UQP|1|a|A|980
8UQP|1|a|A|981
8UQP|1|a|C|982
8UQP|1|a|A|983
8UQP|1|a|A|984
8UQP|1|a|C|985

Current chains

Chain a

23S rRNA

Nearby chains

Chain 0

Ribosomal protein L21

Chain f

50S ribosomal protein L30

Chain z

50S ribosomal protein L20