HL_8URM_002

3D structure

PDB id

8URM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) bound to slippery P-site CCC-C codon and tRNAVal(UAC) in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAUAUGAA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8URM_002 not in the Motif Atlas

Geometric match to HL_5J7L_135

Geometric discrepancy: 0.0948

The information below is about HL_5J7L_135

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80241.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8URM|1|1|U|87
8URM|1|1|G|88
8URM|1|1|A|89
8URM|1|1|U|90
8URM|1|1|A|91
8URM|1|1|U|92
8URM|1|1|G|93
8URM|1|1|A|94
8URM|1|1|A|95

Current chains

Chain 1

13S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23

Chain U

50S ribosomal protein L24

Chain Y

Large ribosomal subunit protein uL29