HL_8URM_015

3D structure

PDB id

8URM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) bound to slippery P-site CCC-C codon and tRNAVal(UAC) in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCGGCGAG

Length

8 nucleotides

Bulged bases

8URM|1|1|G|489, 8URM|1|1|C|490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8URM_015 not in the Motif Atlas

Geometric match to HL_6GSK_204

Geometric discrepancy: 0.388

The information below is about HL_6GSK_204

Detailed Annotation

T-loop

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

8URM|1|1|C|486
8URM|1|1|C|487
8URM|1|1|G|488
8URM|1|1|G|489
8URM|1|1|C|490
8URM|1|1|G|491
8URM|1|1|A|492
8URM|1|1|G|493

Current chains

Chain 1

13S ribosomal RNA

Nearby chains

Chain S

50S ribosomal protein L22