HL_8URM_037

3D structure

PDB id

8URM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) bound to slippery P-site CCC-C codon and tRNAVal(UAC) in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

8URM|1|1|C|1493, 8URM|1|1|U|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8URM_037 not in the Motif Atlas

Geometric match to HL_5J7L_170

Geometric discrepancy: 0.1251

The information below is about HL_5J7L_170

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

8URM|1|1|G|1492
8URM|1|1|C|1493
8URM|1|1|A|1494
8URM|1|1|A|1495
8URM|1|1|A|1496
8URM|1|1|U|1497
8URM|1|1|C|1498

Current chains

Chain 1

13S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L2