HL_8URM_107
3D structure
- PDB id
- 8URM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome with unmodified tRNAPro(GGG) bound to slippery P-site CCC-C codon and tRNAVal(UAC) in the A site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CCU(CM0)AC(6MZ)AG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: CM0, 6MZ
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8URM_107 not in the Motif Atlas
- Geometric match to HL_7VNV_002
- Geometric discrepancy: 0.1666
- The information below is about HL_7VNV_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
8URM|1|6|C|31
8URM|1|6|C|32
8URM|1|6|U|33
8URM|1|6|CM0|34
8URM|1|6|A|35
8URM|1|6|C|36
8URM|1|6|6MZ|37
8URM|1|6|A|38
8URM|1|6|G|39
Current chains
- Chain 6
- tRNA Val
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain 4
- mRNA
- Chain q
- Small ribosomal subunit protein uS12
Coloring options: