HL_8URM_108
3D structure
- PDB id
- 8URM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome with unmodified tRNAPro(GGG) bound to slippery P-site CCC-C codon and tRNAVal(UAC) in the A site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- G(5MU)(PSU)CGAUCC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8URM_108 not in the Motif Atlas
- Geometric match to HL_7UQ6_003
- Geometric discrepancy: 0.0989
- The information below is about HL_7UQ6_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
8URM|1|6|G|53
8URM|1|6|5MU|54
8URM|1|6|PSU|55
8URM|1|6|C|56
8URM|1|6|G|57
8URM|1|6|A|58
8URM|1|6|U|59
8URM|1|6|C|60
8URM|1|6|C|61
Current chains
- Chain 6
- tRNA Val
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- 50S ribosomal protein L16
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