HL_8UTI_005

3D structure

PDB id

8UTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1 and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

8UTI|1|A|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UTI_005 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.0829

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

8UTI|1|A|U|194
8UTI|1|A|U|195
8UTI|1|A|G|196
8UTI|1|A|G|197
8UTI|1|A|A|198
8UTI|1|A|A|199
8UTI|1|A|C|200
8UTI|1|A|A|201

Current chains

Chain A

25S rRNA

Nearby chains

Chain LF

60S ribosomal protein L4-A

Chain La

60S ribosomal protein L26-A

Chain Lg

60S ribosomal protein L32