HL_8UTI_023

3D structure

PDB id

8UTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1 and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

8UTI|1|A|U|1081

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UTI_023 not in the Motif Atlas

Homologous match to HL_8P9A_136

Geometric discrepancy: 0.295

The information below is about HL_8P9A_136

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

8UTI|1|A|C|1076
8UTI|1|A|U|1077
8UTI|1|A|U|1078
8UTI|1|A|A|1079
8UTI|1|A|A|1080
8UTI|1|A|U|1081
8UTI|1|A|U|1082
8UTI|1|A|G|1083

Current chains

Chain A

25S rRNA

Nearby chains

Chain LG

60S ribosomal protein L5

Chain LV

60S ribosomal protein L21-A

Chain Ld

60S ribosomal protein L29