HL_8UTI_042

3D structure

PDB id

8UTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1 and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UTI_042 not in the Motif Atlas

Homologous match to HL_8P9A_159

Geometric discrepancy: 0.1117

The information below is about HL_8P9A_159

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

8UTI|1|A|A|2220
8UTI|1|A|G|2221
8UTI|1|A|A|2222
8UTI|1|A|A|2223
8UTI|1|A|A|2224
8UTI|1|A|U|2225

Current chains

Chain A

25S rRNA

Nearby chains

Chain Lk

60S ribosomal protein L36-A

Chain Lq

60S ribosomal protein L42-A