HL_8UTI_094

3D structure

PDB id

8UTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1 and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CAUUUG

Length

6 nucleotides

Bulged bases

8UTI|1|E|U|1361

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UTI_094 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.2107

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

8UTI|1|E|C|1359
8UTI|1|E|A|1360
8UTI|1|E|U|1361
8UTI|1|E|U|1362
8UTI|1|E|U|1363
8UTI|1|E|G|1364

Current chains

Chain E

18S rRNA

Nearby chains

Chain SB

40S ribosomal protein S5

Chain SF

40S ribosomal protein S16-A

Chain SI

40S ribosomal protein S19-A