HL_8UTJ_009

3D structure

PDB id

8UTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon in the 0 frame

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

8UTJ|1|1|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UTJ_009 not in the Motif Atlas

Geometric match to HL_5J7L_142

Geometric discrepancy: 0.1456

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

8UTJ|1|1|C|305
8UTJ|1|1|U|306
8UTJ|1|1|G|307
8UTJ|1|1|G|308
8UTJ|1|1|A|309
8UTJ|1|1|A|310
8UTJ|1|1|A|311
8UTJ|1|1|G|312

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain U

50S ribosomal protein L24