HL_8UTJ_053

3D structure

PDB id

8UTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon in the 0 frame

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

8UTJ|1|1|G|2250

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UTJ_053 not in the Motif Atlas

Geometric match to HL_8CRE_053

Geometric discrepancy: 0.0897

The information below is about HL_8CRE_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8UTJ|1|1|C|2248
8UTJ|1|1|U|2249
8UTJ|1|1|G|2250
8UTJ|1|1|OMG|2251
8UTJ|1|1|G|2252
8UTJ|1|1|G|2253
8UTJ|1|1|C|2254
8UTJ|1|1|G|2255
8UTJ|1|1|G|2256

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain M

50S ribosomal protein L16

Chain W

Large ribosomal subunit protein bL27