HL_8UU4_003

3D structure

PDB id

8UU4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGGAAC

Length

6 nucleotides

Bulged bases

8UU4|1|A|G|124

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU4_003 not in the Motif Atlas

Homologous match to HL_4WF9_003

Geometric discrepancy: 0.0774

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.8

Basepair signature

cWW-F

Number of instances in this motif group

23

Unit IDs

8UU4|1|A|G|122
8UU4|1|A|G|123
8UU4|1|A|G|124
8UU4|1|A|A|125
8UU4|1|A|A|126
8UU4|1|A|C|127

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

Large ribosomal subunit protein bL34

Chain V

Large ribosomal subunit protein uL23