HL_8UU4_006

3D structure

PDB id

8UU4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

8UU4|1|A|A|198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU4_006 not in the Motif Atlas

Homologous match to HL_7RQB_006

Geometric discrepancy: 0.1069

The information below is about HL_7RQB_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06192.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

14

Unit IDs

8UU4|1|A|G|196
8UU4|1|A|A|197
8UU4|1|A|A|198
8UU4|1|A|A|199
8UU4|1|A|C|200
8UU4|1|A|A|201
8UU4|1|A|U|202
8UU4|1|A|C|203

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain N

Large ribosomal subunit protein uL15

Chain Z

Large ribosomal subunit protein bL28