HL_8UU4_008

3D structure

PDB id

8UU4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU4_008 not in the Motif Atlas

Homologous match to HL_7RQB_008

Geometric discrepancy: 0.0859

The information below is about HL_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67216.7

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

9

Unit IDs

8UU4|1|A|C|248
8UU4|1|A|G|249
8UU4|1|A|G|250
8UU4|1|A|C|251
8UU4|1|A|G|252
8UU4|1|A|A|253
8UU4|1|A|G|254

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 7

Large ribosomal subunit protein bL35

Chain N

Large ribosomal subunit protein uL15