HL_8UU4_023
3D structure
- PDB id
- 8UU4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGUUGAAAAG
- Length
- 10 nucleotides
- Bulged bases
- 8UU4|1|A|U|793, 8UU4|1|A|A|797, 8UU4|1|A|A|798
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8UU4_023 not in the Motif Atlas
- Homologous match to HL_7A0S_022
- Geometric discrepancy: 0.104
- The information below is about HL_7A0S_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50204.2
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 12
Unit IDs
8UU4|1|A|C|790
8UU4|1|A|G|791
8UU4|1|A|U|792
8UU4|1|A|U|793
8UU4|1|A|G|794
8UU4|1|A|A|795
8UU4|1|A|A|796
8UU4|1|A|A|797
8UU4|1|A|A|798
8UU4|1|A|G|799
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 4
- Large ribosomal subunit protein bL32
- Chain 6
- Large ribosomal subunit protein bL34
- Chain D
- Large ribosomal subunit protein uL3
- Chain U
- Large ribosomal subunit protein uL22
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