HL_8UU4_056

3D structure

PDB id

8UU4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGACAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU4_056 not in the Motif Atlas

Homologous match to HL_4WF9_053

Geometric discrepancy: 0.1089

The information below is about HL_4WF9_053

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_45359.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8UU4|1|A|C|2388
8UU4|1|A|U|2389
8UU4|1|A|G|2390
8UU4|1|A|A|2391
8UU4|1|A|C|2392
8UU4|1|A|A|2393
8UU4|1|A|A|2394
8UU4|1|A|G|2395

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 7

Large ribosomal subunit protein bL35

Chain N

Large ribosomal subunit protein uL15

Chain Y

Large ribosomal subunit protein bL27