HL_8UU5_032

3D structure

PDB id

8UU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with pe/E-tRNA (structure I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCUCGUC

Length

7 nucleotides

Bulged bases

8UU5|1|A|C|1369, 8UU5|1|A|U|1373

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU5_032 not in the Motif Atlas

Homologous match to HL_4WF9_033

Geometric discrepancy: 0.0775

The information below is about HL_4WF9_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

8UU5|1|A|G|1368
8UU5|1|A|C|1369
8UU5|1|A|U|1370
8UU5|1|A|C|1371
8UU5|1|A|G|1372
8UU5|1|A|U|1373
8UU5|1|A|C|1374

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain P

Large ribosomal subunit protein bL17

Chain U

Large ribosomal subunit protein uL22