HL_8UU5_038

3D structure

PDB id

8UU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with pe/E-tRNA (structure I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

8UU5|1|A|A|1663, 8UU5|1|A|A|1665, 8UU5|1|A|A|1667

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU5_038 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.1036

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

8UU5|1|A|C|1661
8UU5|1|A|G|1662
8UU5|1|A|A|1663
8UU5|1|A|C|1664
8UU5|1|A|A|1665
8UU5|1|A|C|1666
8UU5|1|A|A|1667
8UU5|1|A|G|1668

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

Large ribosomal subunit protein bL34

Chain U

Large ribosomal subunit protein uL22