HL_8UU5_048

3D structure

PDB id

8UU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with pe/E-tRNA (structure I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

8UU5|1|A|A|2063, 8UU5|1|A|A|2064, 8UU5|1|A|G|2065

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU5_048 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.1048

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8UU5|1|A|G|2060
8UU5|1|A|U|2061
8UU5|1|A|G|2062
8UU5|1|A|A|2063
8UU5|1|A|A|2064
8UU5|1|A|G|2065
8UU5|1|A|A|2066
8UU5|1|A|U|2067
8UU5|1|A|G|2068
8UU5|1|A|C|2069

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL32

Chain D

Large ribosomal subunit protein uL3