HL_8UU5_068

3D structure

PDB id

8UU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with pe/E-tRNA (structure I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAUCCCG

Length

7 nucleotides

Bulged bases

8UU5|1|B|C|39

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU5_068 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1034

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

8UU5|1|B|C|36
8UU5|1|B|A|37
8UU5|1|B|U|38
8UU5|1|B|C|39
8UU5|1|B|C|40
8UU5|1|B|C|41
8UU5|1|B|G|42

Current chains

Chain B

5S Ribosomal RNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL31B

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain F

Large ribosomal subunit protein uL5

Chain Q

Large ribosomal subunit protein uL18