HL_8UU5_087

3D structure

PDB id

8UU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with pe/E-tRNA (structure I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUUCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU5_087 not in the Motif Atlas

Geometric match to HL_7RQB_016

Geometric discrepancy: 0.1734

The information below is about HL_7RQB_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

8UU5|1|a|U|849
8UU5|1|a|U|850
8UU5|1|a|U|851
8UU5|1|a|C|852
8UU5|1|a|C|853
8UU5|1|a|G|854

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain r

Small ribosomal subunit protein bS18