HL_8UU5_088

3D structure

PDB id

8UU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with pe/E-tRNA (structure I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUAACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU5_088 not in the Motif Atlas

Homologous match to HL_4LFB_019

Geometric discrepancy: 0.1172

The information below is about HL_4LFB_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

8UU5|1|a|C|871
8UU5|1|a|U|872
8UU5|1|a|A|873
8UU5|1|a|A|874
8UU5|1|a|C|875
8UU5|1|a|G|876

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain e

Small ribosomal subunit protein uS5

Chain h

Small ribosomal subunit protein uS8