HL_8UU5_094

3D structure

PDB id

8UU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with pe/E-tRNA (structure I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUUUAGUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU5_094 not in the Motif Atlas

Geometric match to HL_3R4F_001

Geometric discrepancy: 0.2214

The information below is about HL_3R4F_001

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8UU5|1|a|A|1142
8UU5|1|a|U|1143
8UU5|1|a|U|1144
8UU5|1|a|U|1145
8UU5|1|a|A|1146
8UU5|1|a|G|1147
8UU5|1|a|U|1148
8UU5|1|a|U|1149

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain i

Small ribosomal subunit protein uS9