HL_8UU6_044

3D structure

PDB id

8UU6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome in complex with p/E-tRNA (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGUAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU6_044 not in the Motif Atlas

Homologous match to HL_7RQB_046

Geometric discrepancy: 0.1383

The information below is about HL_7RQB_046

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

8UU6|1|A|C|1839
8UU6|1|A|G|1840
8UU6|1|A|U|1841
8UU6|1|A|A|1842
8UU6|1|A|A|1843
8UU6|1|A|G|1844

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2

Chain Z

Large ribosomal subunit protein bL28