HL_8UU6_048

3D structure

PDB id

8UU6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome in complex with p/E-tRNA (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

8UU6|1|A|A|2063, 8UU6|1|A|A|2064, 8UU6|1|A|G|2065

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU6_048 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.1187

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

8

Unit IDs

8UU6|1|A|G|2060
8UU6|1|A|U|2061
8UU6|1|A|G|2062
8UU6|1|A|A|2063
8UU6|1|A|A|2064
8UU6|1|A|G|2065
8UU6|1|A|A|2066
8UU6|1|A|U|2067
8UU6|1|A|G|2068
8UU6|1|A|C|2069

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL32

Chain D

Large ribosomal subunit protein uL3