HL_8UU6_059

3D structure

PDB id

8UU6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome in complex with p/E-tRNA (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGUAGUCG

Length

8 nucleotides

Bulged bases

8UU6|1|A|G|2562

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU6_059 not in the Motif Atlas

Homologous match to HL_4WF9_057

Geometric discrepancy: 0.1658

The information below is about HL_4WF9_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

8UU6|1|A|U|2561
8UU6|1|A|G|2562
8UU6|1|A|U|2563
8UU6|1|A|A|2564
8UU6|1|A|G|2565
8UU6|1|A|U|2566
8UU6|1|A|C|2567
8UU6|1|A|G|2568

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 8

Large ribosomal subunit protein bL36

Chain G

Large ribosomal subunit protein uL6