HL_8UU6_078

3D structure

PDB id

8UU6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome in complex with p/E-tRNA (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

8UU6|1|a|A|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU6_078 not in the Motif Atlas

Homologous match to HL_4LFB_009

Geometric discrepancy: 0.2247

The information below is about HL_4LFB_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

8UU6|1|a|C|350
8UU6|1|a|U|351
8UU6|1|a|A|352
8UU6|1|a|C|353
8UU6|1|a|G|354
8UU6|1|a|G|355

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain M

Large ribosomal subunit protein uL14

Chain R

Large ribosomal subunit protein bL19