HL_8UU6_098

3D structure

PDB id

8UU6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome in complex with p/E-tRNA (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAUCAGCAUGC

Length

11 nucleotides

Bulged bases

8UU6|1|a|U|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU6_098 not in the Motif Atlas

Homologous match to HL_4LFB_030

Geometric discrepancy: 0.1431

The information below is about HL_4LFB_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8UU6|1|a|G|1363
8UU6|1|a|A|1364
8UU6|1|a|U|1365
8UU6|1|a|C|1366
8UU6|1|a|A|1367
8UU6|1|a|G|1368
8UU6|1|a|C|1369
8UU6|1|a|A|1370
8UU6|1|a|U|1371
8UU6|1|a|G|1372
8UU6|1|a|C|1373

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain i

Small ribosomal subunit protein uS9

Chain j

Small ribosomal subunit protein uS10

Chain n

Small ribosomal subunit protein uS14