HL_8UU6_103
3D structure
- PDB id
- 8UU6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome in complex with p/E-tRNA (structure II-A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- A(PSU)UGAA(MIA)A(PSU)
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU, MIA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8UU6_103 not in the Motif Atlas
- Homologous match to HL_6UFG_007
- Geometric discrepancy: 0.29
- The information below is about HL_6UFG_007
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
8UU6|1|x|A|31
8UU6|1|x|PSU|32
8UU6|1|x|U|33
8UU6|1|x|G|34
8UU6|1|x|A|35
8UU6|1|x|A|36
8UU6|1|x|MIA|37
8UU6|1|x|A|38
8UU6|1|x|PSU|39
Current chains
- Chain x
- p/E Hybrid State Phenylalanine tRNA
Nearby chains
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain i
- Small ribosomal subunit protein uS9
- Chain w
- F-Stop mRNA
Coloring options: