HL_8UU7_031

3D structure

PDB id

8UU7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HflXr, HPF, and E-site tRNA (structure II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU7_031 not in the Motif Atlas

Homologous match to HL_4WF9_032

Geometric discrepancy: 0.1014

The information below is about HL_4WF9_032

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8UU7|1|A|G|1325
8UU7|1|A|U|1326
8UU7|1|A|G|1327
8UU7|1|A|A|1328
8UU7|1|A|G|1329
8UU7|1|A|A|1330
8UU7|1|A|A|1331
8UU7|1|A|U|1332
8UU7|1|A|C|1333

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain P

Large ribosomal subunit protein bL17

Chain U

Large ribosomal subunit protein uL22