HL_8UU7_032

3D structure

PDB id

8UU7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HflXr, HPF, and E-site tRNA (structure II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCUCGUC

Length

7 nucleotides

Bulged bases

8UU7|1|A|C|1369, 8UU7|1|A|U|1373

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU7_032 not in the Motif Atlas

Homologous match to HL_4WF9_033

Geometric discrepancy: 0.0998

The information below is about HL_4WF9_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

8UU7|1|A|G|1368
8UU7|1|A|C|1369
8UU7|1|A|U|1370
8UU7|1|A|C|1371
8UU7|1|A|G|1372
8UU7|1|A|U|1373
8UU7|1|A|C|1374

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain P

Large ribosomal subunit protein bL17

Chain U

Large ribosomal subunit protein uL22