HL_8UU7_058

3D structure

PDB id

8UU7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HflXr, HPF, and E-site tRNA (structure II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGCAUGGAAG

Length

10 nucleotides

Bulged bases

8UU7|1|A|C|2439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU7_058 not in the Motif Atlas

Homologous match to HL_4WF9_055

Geometric discrepancy: 0.0866

The information below is about HL_4WF9_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8UU7|1|A|C|2437
8UU7|1|A|G|2438
8UU7|1|A|C|2439
8UU7|1|A|A|2440
8UU7|1|A|U|2441
8UU7|1|A|G|2442
8UU7|1|A|G|2443
8UU7|1|A|A|2444
8UU7|1|A|A|2445
8UU7|1|A|G|2446

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain N

Large ribosomal subunit protein uL15