HL_8UU7_078
3D structure
- PDB id
- 8UU7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HflXr, HPF, and E-site tRNA (structure II-B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GACUGAGACACGGC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8UU7_078 not in the Motif Atlas
- Homologous match to HL_4LFB_008
- Geometric discrepancy: 0.1225
- The information below is about HL_4LFB_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_39665.1
- Basepair signature
- cWW-cWW-tWH-F-tWH-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8UU7|1|a|G|328
8UU7|1|a|A|329
8UU7|1|a|C|330
8UU7|1|a|U|331
8UU7|1|a|G|332
8UU7|1|a|A|333
8UU7|1|a|G|334
8UU7|1|a|A|335
8UU7|1|a|C|336
8UU7|1|a|A|337
8UU7|1|a|C|338
8UU7|1|a|G|339
8UU7|1|a|G|340
8UU7|1|a|C|341
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain p
- Small ribosomal subunit protein bS16
- Chain t
- Small ribosomal subunit protein bS20
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