HL_8UU7_098
3D structure
- PDB id
- 8UU7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HflXr, HPF, and E-site tRNA (structure II-B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUGCAACUCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8UU7_098 not in the Motif Atlas
- Homologous match to HL_4LFB_029
- Geometric discrepancy: 0.1563
- The information below is about HL_4LFB_029
- Detailed Annotation
- T-loop with 3 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_93658.1
- Basepair signature
- cWW-tWH-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8UU7|1|a|C|1321
8UU7|1|a|U|1322
8UU7|1|a|G|1323
8UU7|1|a|C|1324
8UU7|1|a|A|1325
8UU7|1|a|A|1326
8UU7|1|a|C|1327
8UU7|1|a|U|1328
8UU7|1|a|C|1329
8UU7|1|a|G|1330
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain m
- Small ribosomal subunit protein uS13
- Chain n
- Small ribosomal subunit protein uS14
- Chain s
- Small ribosomal subunit protein uS19
Coloring options: