HL_8UU7_103

3D structure

PDB id

8UU7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HflXr, HPF, and E-site tRNA (structure II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

G(5MU)(PSU)CGAUUCC

Length

10 nucleotides

Bulged bases

8UU7|1|y|C|56, 8UU7|1|y|G|57

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU7_103 not in the Motif Atlas

Geometric match to HL_2Y8Y_001

Geometric discrepancy: 0.3882

The information below is about HL_2Y8Y_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

8UU7|1|y|G|53
8UU7|1|y|5MU|54
8UU7|1|y|PSU|55
8UU7|1|y|C|56
8UU7|1|y|G|57
8UU7|1|y|A|58
8UU7|1|y|U|59
8UU7|1|y|U|60
8UU7|1|y|C|61
8UU7|1|y|C|62

Current chains

Chain y

E-site Phenylalanine tRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA