HL_8UU9_011

3D structure

PDB id

8UU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAAG

Length

5 nucleotides

Bulged bases

8UU9|1|A|A|364, 8UU9|1|A|A|365

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU9_011 not in the Motif Atlas

Homologous match to HL_5J7L_143

Geometric discrepancy: 0.0528

The information below is about HL_5J7L_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

8UU9|1|A|C|362
8UU9|1|A|A|363
8UU9|1|A|A|364
8UU9|1|A|A|365
8UU9|1|A|G|366

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4