HL_8UU9_017

3D structure

PDB id

8UU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUUAAUG

Length

8 nucleotides

Bulged bases

8UU9|1|A|U|590, 8UU9|1|A|U|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU9_017 not in the Motif Atlas

Homologous match to HL_4WF9_017

Geometric discrepancy: 0.1264

The information below is about HL_4WF9_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50318.1

Basepair signature

cWW-cSH-F-F

Number of instances in this motif group

1

Unit IDs

8UU9|1|A|C|587
8UU9|1|A|G|588
8UU9|1|A|U|589
8UU9|1|A|U|590
8UU9|1|A|A|591
8UU9|1|A|A|592
8UU9|1|A|U|593
8UU9|1|A|G|594

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain L

Large ribosomal subunit protein uL13

Chain T

Large ribosomal subunit protein bL21