HL_8UU9_025

3D structure

PDB id

8UU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUUAGG

Length

6 nucleotides

Bulged bases

8UU9|1|A|U|873, 8UU9|1|A|G|876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU9_025 not in the Motif Atlas

Homologous match to HL_5J7L_157

Geometric discrepancy: 0.1069

The information below is about HL_5J7L_157

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_55195.3

Basepair signature

cWW-F

Number of instances in this motif group

6

Unit IDs

8UU9|1|A|U|872
8UU9|1|A|U|873
8UU9|1|A|U|874
8UU9|1|A|A|875
8UU9|1|A|G|876
8UU9|1|A|G|877

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain N

Large ribosomal subunit protein uL15