HL_8UU9_031

3D structure

PDB id

8UU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU9_031 not in the Motif Atlas

Homologous match to HL_7A0S_031

Geometric discrepancy: 0.08

The information below is about HL_7A0S_031

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

8UU9|1|A|C|1267
8UU9|1|A|G|1268
8UU9|1|A|G|1269
8UU9|1|A|A|1270
8UU9|1|A|A|1271
8UU9|1|A|G|1272

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain S

Large ribosomal subunit protein bL20

Chain T

Large ribosomal subunit protein bL21