HL_8UU9_064

3D structure

PDB id

8UU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGCCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU9_064 not in the Motif Atlas

Homologous match to HL_4WF9_061

Geometric discrepancy: 0.1465

The information below is about HL_4WF9_061

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_65794.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

14

Unit IDs

8UU9|1|A|C|2734
8UU9|1|A|G|2735
8UU9|1|A|C|2736
8UU9|1|A|C|2737
8UU9|1|A|A|2738
8UU9|1|A|G|2739

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain P

Large ribosomal subunit protein bL17