HL_8UU9_103

3D structure

PDB id

8UU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

G(5MU)(PSU)CGAUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UU9_103 not in the Motif Atlas

Homologous match to HL_6UFG_008

Geometric discrepancy: 0.2653

The information below is about HL_6UFG_008

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.8

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

140

Unit IDs

8UU9|1|x|G|53
8UU9|1|x|5MU|54
8UU9|1|x|PSU|55
8UU9|1|x|C|56
8UU9|1|x|G|57
8UU9|1|x|A|58
8UU9|1|x|U|59
8UU9|1|x|U|60
8UU9|1|x|C|61

Current chains

Chain x

pe/E Hybrid State Phenylalanine tRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA