HL_8UVR_179

3D structure

PDB id

8UVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with spectinomycin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UVR_179 not in the Motif Atlas

Homologous match to HL_8VTW_068

Geometric discrepancy: 0.0909

The information below is about HL_8VTW_068

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8UVR|1|2A|C|2856
8UVR|1|2A|G|2857
8UVR|1|2A|C|2858
8UVR|1|2A|G|2859
8UVR|1|2A|A|2860
8UVR|1|2A|G|2861

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2T

50S ribosomal protein L19