HL_8UVS_160

3D structure

PDB id

8UVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with spectinomycin derivative 2694, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

8UVS|1|2A|A|2030, 8UVS|1|2A|A|2031, 8UVS|1|2A|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UVS_160 not in the Motif Atlas

Homologous match to HL_8VTW_049

Geometric discrepancy: 0.0702

The information below is about HL_8VTW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8UVS|1|2A|G|2027
8UVS|1|2A|U|2028
8UVS|1|2A|G|2029
8UVS|1|2A|A|2030
8UVS|1|2A|A|2031
8UVS|1|2A|G|2032
8UVS|1|2A|A|2033
8UVS|1|2A|U|2034
8UVS|1|2A|G|2035
8UVS|1|2A|C|2036

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3